Adding new features and patching JURASSIC AMULET compiler

src/main/java/tmltranslator/TMLModeling.java

...main/java/tmltranslator/mutations/ConnectionMutation.java

.../java/tmltranslator/mutations/DataConnectionMutation.java

...ava/tmltranslator/mutations/DiplodocusMutationParser.java

...java/tmltranslator/mutations/EventConnectionMutation.java

...tmltranslator/mutations/RemoveDataConnectionMutation.java

...mltranslator/mutations/RemoveEventConnectionMutation.java

...translator/mutations/RemoveRequestConnectionMutation.java

...va/tmltranslator/mutations/RequestConnectionMutation.java